2022 KUCG Symposium Program


KUCG Symposium Program (May 20th)
KUCG Symposium Program (May 20th)
8:00amBreakfast & Registration
 Session 1: Chromosome-level dynamics
9:00amRob Unckless (KUCG Director, Associate Professor in MB at KU)Welcoming Remarks
9:15amJae Choi (Postdoc at NYU, Assistant Professor in EEB at KU - 2023)Natural variation in plant telomere length is associated with flowering time
9:30amMartina Dalikova (Postdoc in EEB at KU)Assembly and characterization of W chromosome in monarch butterfly (Danaus plexippus)
9:45amBrandon Fagen (Technician at Stowers Institute)Outer repeats of Schizosaccharomyces pombe centromeres experience high rates of gene conversion, expansion, and contraction
10:00amAndrew Degar (Illumina)Metagenomic Whole Genome Sequencing Using Illumina Products
10:15amCoffee/tea Break
 Session 2: Genomics in human health
10:45amSamalee Banerjee (Graduate student in MB at KU)Quorum Sensing Regulation by the Nitrogen Phosphotransferase System in Pseudomonas aeruginosa
11:00amEmily Nissen (Bioinformatician at KUMC)Assessment of immune cell profiles among apparently healthy postmenopausal women in the Women's Health Initiative using DNA methylation-based methods
11:15amTimothy Raben (Postdoc at Michigan State University)Polygenic Risk Scores using Sparse Prediction: sibling validation, clinical application, and other methods
11:30amNanda Yellapu (Postdoc at KUMC)Identification of treatment response signatures in the Protein-Protein interaction network maps of triple negative breast cancer
11:45amPoster Session 1 (Odd Numbers)
12:30pmLunch Break
 Session 3: Gene Expression
1:30pmLuciana Castellano (Graduate student at Stowers Institute)Codon-dependent regulation of gene expression during Dengue infection
1:45pmJeffrey Medley (postdoc at Kansas State University and KINBRE speaker)Regulation of microRNA Strand Selection in vivo
2:00pmPatrick Lansdon (Postdoc in MB at KU)Wild-type Caenorhabditis elegans Isolates Exhibit Distinct Gene Expression Profiles in Response to Microbial Infection
2:15pmJoanna Gress (Assistant Professor at Emporia State University)What the Buzz about CBD: Does cannabidiol oil provide a protective effect against pesticide exposure in the honey bee gut?
2:30pmCoffee/tea Break
2:45pmPoster Session 2 (Even Numbers)
 Session 4: Microbiome and Genomics
3:30pmTokee Tareq (Graduate student in EEB at KU)Functional profiling of soil microbiome for elucidating maize heterosis
3:45pmSarah Mullinax (Graduate student in MB at KU)The intersection of sex, immunity, and the microbiome on the maintenance of genetic variation in the Drosophila antimicrobial peptide diptericin A
4:00pmDingbo Lin (Associate Professor at Oklahoma State University)Zeaxanthin-altered gut microbiome is associated with changes in whole body bone mineral density in mice
4:15pmKeynote Speaker: Helen E. Vuong (Assistant Professor at University of Minnesota)Understanding microbiome and nervous system interactions
5:15pmHappy Hour and Appetizers + Closing Remarks and Awards
7:00pmDinner (on your own)

Poster List
 
Poster List
Poster #PresenterTitle
1Lauren E. Y. NormanDogs about the Strait: Using dog genomes to assess human interactions
2James WaltersZWYX: Software for detecting sex-linked regions and chimeras in genome assemblies
3Ziyu ZhuSingle-cell RNA Sequencing of Oligodendrocytes to Map how Nuclear Hormone Receptor Ligands Regulate Differentiation
4Scott RomeiserAnalyzing the Cellulolytic Capabilities of a Bacterial Subcommunity Isolated from Soil
5Victor AndreevEvidence for advanced generation hybridization between two prairie milkweeds
6Austin Gregory MorrisonThe influence of the oral microbiome on head and neck squamous cell carcinoma
7J. Rene WongRole of maternal RNA decay during zebrafish embryo development
8Jennifer HackettNext Generation Sequencing at KU Genome Sequencing Core
9Michay DieziCodon: Harnessing mRNA stability to customize gene expression
10Lydia SykoraAncient genomes from the Plains: Preliminary evidence for long-distance population continuity
11Stacy Holt JrWhat is Salvinia molesta? Determining the Genetic Composition and Number of Origins of the Invasive Giant Salvinia
12Kelsey E. KnewtsonRNA Sequencing Reveals Donor Variability in Sex- and Age-Matched Human Meniscal Fibrochondrocyte Response to Estrogen
13Justin M. HutchisonTracking SARS-CoV-2 variants through municipal wastewater
14A.J. TreichelFishing with CRISPR/Cas13d: Elucidating micropeptide functions in zebrafish development
15Muhammad Hashim RazaFamily-based whole exome sequencing identifies BUD13 variants involved in specific language impairment
16Eva MorrisonA workflow for the identification of novel transposable element insertions in Drosophila virilis pooled long reads
17Caroline KisielinskiDigging up DNA: Sedimentary ancient DNA as an interdisciplinary tool to reconstruct past biodiversity
18Kelsey FergusonMembrane-anchored UNC-6/Netrin reveals roles of both close- and long-range interactions in regulating VD growth cone dorsal outgrowth
19Gabriel da Silva PescadorProtein Quality Control in Early Vertebrate Development
20Devon A. DeRaadSNPfiltR: an R package for interactive and reproducible SNP filtering
21Kervens AccilienRole of Epistasis in Differential Resistance Outcomes
22Felicity TsoCorn-y Cultures: Maize Root Endophyte Culture Collection
23Peter BobkowskiThe More You Watch, the Less You Know: How Genetic Literacy Relates to Consuming Media About Genetic Ancestry Tests
24Cory B. JenkinsonComputer-Aided, Resistance-Gene-Assisted Genome Mining for Proteasome and HMG-CoA Reductase Inhibitors
25Kevin ChovanecMaximizing the phylogenomic utility of formalin-fixed museum specimens
26Nicholas LacyVerifying insertion of a plasmid by non-homologous end joining using PCR and sequencing
27Stefan CerbinIdentifying DNA transposable element excisions in a Drosophila virilis syndrome of hybrid dysgenesis using long-read sequencing
28Jordan X. LyerlaEfficacy of CRISPR-assisted insertion tagging
29Gopal KushawahCRISPR-Cas13d induces efficient mRNA knock-down in animal embryos
30Sam CampbellUnderstanding the features of highly diverged Wtf proteins to elucidate their mechanism of action
31Snehal MahadikThe tom-1/tomosyn locus encodes different isoforms with opposing roles in growth cone protrusion
32Ganesh PanzadeAnnotation of isomiR dynamics across the C. elegans developmental stages
33Anuradha GhoshIncorporating bioinformatics and genomics in undergraduate curriculum
34Deepa UpretiOral administration of water extract from Euglena gracilis alters the intestinal microbiota and metabolites and prevents lung carcinoma growth in mice
35Ana DoradorA telomere-associated system of paramutation in Drosophila virilis mediated by maternally provisioned piRNAs